Problem with the BB MF3D mapping :X

Has anyone else expierenced this problem while using a MF3D loaded with BeauBryte's 3 in one mapping??...I can't tell EXACTLY what causes the problem but here's what happens...Deck A will be playing, while I'm cueing Deck B, no problems yet. Now I move from my S4 to the MF3D to start working in some FX and when I switch from the "cue layer" to the "FX" layer in BB's mapping a nasty peak filter/reverb/distortion/delay type effect comes onto the OPPOSITE track that I have the MF3D actually working on. In the case I'm describing I would have my MF3D configured to effect deck B, but it would immediately add all of these effects to deck A when I switch between layers of the mapping.

I've noticed recently that the assignment of the effects in the middle of traktor (see picture) will be active for all four (the picture below has 2) of the FX for the deck being affected, in our case it would be A.

I've noticed this is also comes on when I intially start traktor sometimes aswell. I don't understand why it happens or doesn't happen, but it REALLY messes a set up when it does.

I run traktor 2.5 with an S4 and MF3D running BeauBryte's all in one mapping on my MBP. I run my S4 and MF3D thru a USB hub into my laptop, and an external HDD into my laptop as well.

Sorry this is such a abstract question, but I don't know what else to do. I love the mapping and have really started to incorporate it into my sets and workflow.