Reply to VMS2 mapping for Traktor Pro 2

Hey guys,
I need some help. I've been using TSP for a while now but recently decidied to go down the controller route as I'm short on space at my little flat! Anyway I bought a VMS2 which turned up yesterday and first impressions were good. Didn't really want to use the included VDJ LE so I downloaded a mapping for Traktor (from the American Audio website).
Installed the tsi file and noticed something rather strange. the EQ's on channel 1 (deck A) all seemed to work fine as did the line fader, gain etc. Then I moved the knobs on deck B and to my surprise everything on deck B also moved everything on Deck A! Line fader, EQ's and Gain for some reason seem to be linked to Deck A, Is there anyway to remap it so they work on seperate channels or is it something simple I've overlooked?
Thanks in advance,
Richie Twinz