Reply to Traktor with timecode strange behaviour any suggestions please

Hi Guys I fairly new to timecode though not to djing.
Just upgraded my traktor pro to traktor scratch pro.

So here's the problem
I'm playing time code on my cdj then on the x1 I then jump to a hotcue,the music plays from the hotcue but
the timecode then does not work, the orange cd symbol next to the play button on the software switches off
To get back timecode control back I have to switch the cd symbol next to the play button back on to turn it orange with the mouse!
Is this normal or am I doing something wrong?
I use loads of hotcues and don't want to have to keep switching the timecode back on with the mouse.

I have also noticed that when I set a cue point on the cdj then go to the x1 to set it as a hotcue its a couple of beats off?

Any ideas please?